Puerto Vallarta Airport has two terminals, A and B. Both terminals are located in the same building. A corridor connects both terminals. In general terms, Terminal A is where national flights arrive, and Terminal B is the one for international flights.

Some airlines operating at Puerto Vallarta Airport include United Airlines, Air Canada, Aeroméxico, Interjet, Volaris, Sun Country Airlines, American Airlines, Delta Airlines, Alaska Airlines, Frontier Airlines, US Airways, VivaAerobus, and Virgin America.